PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017751-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 520aa    MW: 58380.9 Da    PI: 7.3091
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017751-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.3e-13232282155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  AHYPO_017751-RA 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 282
                      89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-5160203IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-17232292IPR016177DNA-binding domain
CDDcd000182.17E-25232292No hitNo description
PfamPF008473.4E-9232282IPR001471AP2/ERF domain
SMARTSM003802.0E-32233296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16233290IPR001471AP2/ERF domain
PROSITE profilePS5103215.672233290IPR001471AP2/ERF domain
PRINTSPR003676.5E-6234245IPR001471AP2/ERF domain
PRINTSPR003676.5E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MWDLNGSPDE ITRVISRNND ESEGCSSQKT TSFEADEKNS PSSTVERSHT NNNRRIFGFS  60
FLSNHNKNNN NDDEEDDNSS YSGETPVTRQ FFPVQLDVSG STSTIVGEFP KPHWAGASLY  120
PSADTMSAAA IMGPSTTTKP MELAQPMKKS RRGPRSRSSQ YRGVTYYRRT GRWESHICAY  180
DRAAIKFRGV EADINFSLED YQDDLKQMGN LTKEEFVHIL RRQSTGFPRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYEEELKA  300
SAECSTSGGG GGEHNLDLSL GGSSSSRKNC TNLDFRDTSA MQDQHQQQQS QYSSSMQLEL  360
NWQNQGPRPK DAYRGENHDH AETLQLLSQT RLQASQNSSK NNDMSMHNRY SGQMPVFVPP  420
HLNSSNYHHQ IQFPSSSNGG RIDLMLSTTN NNINSININE NRHQQQQQQQ QQQQWHQIGH  480
PSQLYVTAAA SSGFSQQIST PPPNWMPPNN AFHPLMRPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667967.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotP479271e-101AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0J8DVY80.0A0A0J8DVY8_BETVU; Uncharacterized protein
STRINGVIT_07s0031g00220.t011e-149(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-84AP2 family protein